STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU94902.1RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)    
Predicted Functional Partners:
AKU94904.1
Tryptophan synthase alpha chain.
   
   0.783
AKU94903.1
Hypothetical protein.
       0.773
AKU94905.1
Type IV fimbrial biogenesis protein PilY1.
       0.773
AKU94906.1
Hypothetical protein.
       0.686
AKV03256.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.623
AKU94907.1
Hypothetical protein.
       0.556
AKV02646.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.532
AKU96853.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.512
AKV03953.1
RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.509
AKU94901.1
Hypothetical protein.
       0.507
Your Current Organism:
Labilithrix luteola
NCBI taxonomy Id: 1391654
Other names: DSM 27648, L. luteola, Labilithrix luteola Yamamoto et al. 2014, NBRC 109946, Sorangiineae bacterium B00002, strain B00002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.