STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU99085.1Tryptophan 2,3-dioxygenase. (303 aa)    
Predicted Functional Partners:
AKV00234.1
Metal-dependent hydrolase.
 
 
 0.960
AKV02838.1
Tryptophan 2,3-dioxygenase.
  
  
 
0.915
AKV02460.1
Aromatic-L-amino-acid decarboxylase.
     
  0.900
AKV02922.1
Aromatic-L-amino-acid decarboxylase.
     
  0.900
AKU99086.1
Cysteine desulfurase.
 
     0.889
AKU99087.1
Hydroxyneurosporene methyltransferase.
 
     0.883
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.813
trpB
Tryptophan synthase beta chain like protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
trpB-2
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
AKU96144.1
NADH:flavin oxidoreductase/NADH oxidase.
 
  
 0.670
Your Current Organism:
Labilithrix luteola
NCBI taxonomy Id: 1391654
Other names: DSM 27648, L. luteola, Labilithrix luteola Yamamoto et al. 2014, NBRC 109946, Sorangiineae bacterium B00002, strain B00002
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