STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKV03379.1Hypothetical protein. (392 aa)    
Predicted Functional Partners:
AKV03375.1
Uptake hydrogenase large subunit.
 
 
 0.955
AKV03377.1
Hypothetical protein.
 
     0.953
AKV03378.1
Hypothetical protein.
 
     0.953
AKV03380.1
Hydrogenase maturation protease.
 
     0.953
AKV03374.1
Uptake hydrogenase small subunit precursor.
 
  
 0.920
AKV03376.1
Hypothetical protein.
 
     0.895
AKV03381.1
Hypothetical protein.
       0.773
hypA
[NiFe] hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.640
AKU95545.1
Hypothetical protein.
  
     0.591
AKV03366.1
Phosphoheptose isomerase 1.
 
   
 0.552
Your Current Organism:
Labilithrix luteola
NCBI taxonomy Id: 1391654
Other names: DSM 27648, L. luteola, Labilithrix luteola Yamamoto et al. 2014, NBRC 109946, Sorangiineae bacterium B00002, strain B00002
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