STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
O988_07634Protein BCP1; Involved in nuclear export, actin cytoskeleton organization and vesicular transport; Belongs to the BCP1 family. (290 aa)    
Predicted Functional Partners:
O988_01820
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.914
O988_02845
Brix domain-containing protein.
   
    0.861
O988_08009
Uncharacterized protein.
   
    0.802
O988_08453
WD_REPEATS_REGION domain-containing protein.
   
   0.766
O988_07687
Uncharacterized protein.
   
    0.742
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
 
 0.741
O988_07733
CP-type G domain-containing protein.
   
   0.734
O988_06751
Uncharacterized protein.
   
    0.728
O988_00390
Uncharacterized protein.
   
    0.728
O988_09214
Uncharacterized protein.
   
 
 0.717
Your Current Organism:
Pseudogymnoascus sp. VKMF3808
NCBI taxonomy Id: 1391699
Other names: P. sp. VKM F-3808, Pseudogymnoascus sp. VKM F-3808
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