STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS91350.1Beta-barrel assembly machine subunit BamE. (86 aa)    
Predicted Functional Partners:
SDS91384.1
Uncharacterized conserved protein, DUF924 family.
       0.639
fbp
D-fructose 1,6-bisphosphatase; Belongs to the FBPase class 1 family.
       0.639
SDS58809.1
Hypothetical protein.
  
     0.578
SDS91456.1
Hypothetical protein.
 
     0.578
SDS48476.1
Peptidoglycan-binding protein, CsiV.
 
     0.569
SDS44672.1
CHAD domain-containing protein.
  
     0.548
SDS34473.1
Phosphoglycerol transferase MdoB.
  
     0.514
SDR74428.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
     0.509
SDT06368.1
Protein of unknown function VcgC/VcgE.
  
    0.501
SDS13109.1
Hypothetical protein.
  
     0.497
Your Current Organism:
Pseudomonas oryzae
NCBI taxonomy Id: 1392877
Other names: CGMCC 1.12417, KCTC 32247, P. oryzae, Pseudomonas sp. WM-3, strain WM-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.