STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT04945.1Membrane protein TerC, possibly involved in tellurium resistance. (252 aa)    
Predicted Functional Partners:
SDT04975.1
Mechanosensitive ion channel.
  
    0.809
SDT05007.1
ATP-binding cassette, subfamily F, member 3.
       0.809
SDT05037.1
TIGR02444 family protein.
       0.626
SDT04908.1
Homoserine/homoserine lactone efflux protein.
       0.603
SDS34185.1
Putative hemolysin.
 
    0.585
SDT04869.1
High-affinity iron transporter.
       0.478
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
    0.437
SDT04832.1
Hypothetical protein; Belongs to the UPF0178 family.
       0.410
Your Current Organism:
Pseudomonas oryzae
NCBI taxonomy Id: 1392877
Other names: CGMCC 1.12417, KCTC 32247, P. oryzae, Pseudomonas sp. WM-3, strain WM-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.