KCZ73109.1 protein (Methanoperedens nitroreducens)

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

KCZ73109.1

PFAM: Protein of unknown function DUF86. (137 aa)

Predicted Functional Partners:

KCZ73110.1

0.965

KCZ73318.1

0.874

KCZ73107.1

0.773

KCZ73108.1

0.773

KCZ73176.1

0.714

KCZ70862.1

0.707

KCZ71062.1

0.699

KCZ71006.1

0.624

KCZ73133.1

0.597

KCZ71809.1

0.597

Your Current Organism:

Methanoperedens nitroreducens

NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KCZ70862.1	KCZ71062.1	ANME2D_02887	ANME2D_03092	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.692
KCZ70862.1	KCZ73109.1	ANME2D_02887	ANME2D_00168	PFAM: Nucleotidyltransferase domain.	PFAM: Protein of unknown function DUF86.	0.707
KCZ71006.1	KCZ71062.1	ANME2D_03035	ANME2D_03092	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.594
KCZ71006.1	KCZ73109.1	ANME2D_03035	ANME2D_00168	PFAM: Nucleotidyltransferase domain.	PFAM: Protein of unknown function DUF86.	0.624
KCZ71062.1	KCZ70862.1	ANME2D_03092	ANME2D_02887	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.692
KCZ71062.1	KCZ71006.1	ANME2D_03092	ANME2D_03035	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.594
KCZ71062.1	KCZ71809.1	ANME2D_03092	ANME2D_01864	PFAM: Nucleotidyltransferase domain.	Nucleotidyltransferase family protein; PFAM: Nucleotidyltransferase domain.	0.594
KCZ71062.1	KCZ73109.1	ANME2D_03092	ANME2D_00168	PFAM: Nucleotidyltransferase domain.	PFAM: Protein of unknown function DUF86.	0.699
KCZ71062.1	KCZ73110.1	ANME2D_03092	ANME2D_00169	PFAM: Nucleotidyltransferase domain.	Hypothetical protein.	0.645
KCZ71062.1	KCZ73133.1	ANME2D_03092	ANME2D_00192	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.594
KCZ71062.1	KCZ73176.1	ANME2D_03092	ANME2D_00236	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.694
KCZ71062.1	KCZ73318.1	ANME2D_03092	ANME2D_00384	PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.671
KCZ71809.1	KCZ71062.1	ANME2D_01864	ANME2D_03092	Nucleotidyltransferase family protein; PFAM: Nucleotidyltransferase domain.	PFAM: Nucleotidyltransferase domain.	0.594
KCZ71809.1	KCZ73109.1	ANME2D_01864	ANME2D_00168	Nucleotidyltransferase family protein; PFAM: Nucleotidyltransferase domain.	PFAM: Protein of unknown function DUF86.	0.597
KCZ73107.1	KCZ73108.1	ANME2D_00166	ANME2D_00167	Conserved Archaeal protein (DUF2204); PFAM: Uncharacterised nucleotidyltransferase.	Hypothetical protein.	0.773
KCZ73107.1	KCZ73109.1	ANME2D_00166	ANME2D_00168	Conserved Archaeal protein (DUF2204); PFAM: Uncharacterised nucleotidyltransferase.	PFAM: Protein of unknown function DUF86.	0.773
KCZ73107.1	KCZ73110.1	ANME2D_00166	ANME2D_00169	Conserved Archaeal protein (DUF2204); PFAM: Uncharacterised nucleotidyltransferase.	Hypothetical protein.	0.773
KCZ73108.1	KCZ73107.1	ANME2D_00167	ANME2D_00166	Hypothetical protein.	Conserved Archaeal protein (DUF2204); PFAM: Uncharacterised nucleotidyltransferase.	0.773
KCZ73108.1	KCZ73109.1	ANME2D_00167	ANME2D_00168	Hypothetical protein.	PFAM: Protein of unknown function DUF86.	0.773
KCZ73108.1	KCZ73110.1	ANME2D_00167	ANME2D_00169	Hypothetical protein.	Hypothetical protein.	0.773

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Network Stats

number of nodes:

11

number of edges:

36

average node degree:

6.55

avg. local clustering coefficient:

0.795

expected number of edges:

29

PPI enrichment p-value:

0.133

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006260

DNA replication

5 of 46

1.31

1.0

0.0031

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003887

DNA-directed DNA polymerase activity

3 of 9

1.79

0.97

0.0121

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009360

DNA polymerase III complex

3 of 4

2.15

1.78

0.00036

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1384

Mixed, incl. Bacterial nucleoid, and rRNA (cytosine) methyltransferase activity

4 of 7

2.03

2.07

6.60e-05

CL:600

DNA polymerase complex

3 of 5

2.05

1.61

0.00072

CL:594

DNA replication, and DNA topoisomerase, type IIA-like domain superfamily

4 of 18

1.62

1.47

0.00047

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03030

DNA replication

3 of 21

1.43

0.77

0.0222

map03440

Homologous recombination

3 of 23

1.39

0.75

0.0222

map03430

Mismatch repair

3 of 23

1.39

0.75

0.0222

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0235

DNA replication

4 of 20

1.57

1.38

0.00071

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