STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ73141.1Biotin synthetase-like uncharacterized protein. (265 aa)    
Predicted Functional Partners:
KCZ70989.1
Biotin synthase-related enzyme; PFAM: Radical SAM superfamily.
   
 0.805
KCZ73142.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
       0.723
KCZ70826.1
PFAM: Biotin/lipoate A/B protein ligase family.
 
     0.626
KCZ73434.1
PFAM: Biotin/lipoate A/B protein ligase family.
 
     0.613
KCZ73143.1
Proteasome Rpn11 subunit JAMM motif; PFAM: Prokaryotic homologs of the JAB domain.
       0.599
KCZ72719.1
PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoyltransferase and lipoate-protein ligase.
 
     0.546
KCZ73140.1
Hypothetical protein.
       0.536
sudA
NADPH-dependent glutamate synthase, homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; TIGRFAM: glutamate synthase (NADPH), homotetrameric.
 
     0.493
KCZ72796.1
Putative peroxiredoxin; PFAM: DsrE/DsrF-like family.
 
     0.421
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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