STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ73460.1Small primase-like protein with Toprim domain; PFAM: Toprim domain. (139 aa)    
Predicted Functional Partners:
KCZ73461.1
TIGR00251 family protein; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: TIGR00251 family protein.
 
     0.883
KCZ73459.1
DNA primase; PFAM: Toprim domain.
 
   
 0.732
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
 
  
 0.719
KCZ72328.1
Putative exosome subunit; PFAM: RNA binding.
  
     0.591
rrp-2
RNA-binding protein Rrp4 (containing S1 domain and KH domain); Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.
  
     0.577
KCZ73462.1
Putative periplasmic solute-binding protein; PFAM: Menaquinone biosynthesis.
       0.561
KCZ72331.1
Putative methyltransferase; PFAM: Met-10+ like-protein.
  
     0.545
serS
PFAM: tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase, Methanococcus jannaschii family.
 
     0.541
KCZ73463.1
Hypothetical protein; PFAM: Cupredoxin-like domain.
       0.523
KCZ70338.1
Putative membrane protein; PFAM: Tripartite tricarboxylate transporter TctA family.
  
     0.519
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.