STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ73660.1RecA-superfamily ATPase possibly involved in signal transduction; PFAM: KaiC. (254 aa)    
Predicted Functional Partners:
KCZ73657.1
Putative nucleoside kinase, CMP and AMP kinase; PFAM: AAA domain.
       0.682
hisC
PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.
       0.682
argD
PFAM: Aminotransferase class-III; TIGRFAM: transaminase, acetylornithine/succinylornithine family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.682
KCZ73661.1
Hypothetical protein.
       0.594
KCZ73662.1
Archaeal serine protease; PFAM: Lon protease (S16) C-terminal proteolytic domain.
 
     0.546
KCZ71442.1
KaiB domain-containing protein; PFAM: KaiB domain.
  
     0.448
KCZ71449.1
KaiB domain-containing protein; PFAM: KaiB domain.
  
     0.443
KCZ73014.1
KaiB domain-containing protein; PFAM: KaiB domain.
  
     0.439
KCZ71441.1
KaiB domain-containing protein; PFAM: KaiB domain.
  
     0.425
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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