STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ72654.1RecA-superfamily ATPase possibly involved in signal transduction; PFAM: KaiC; TIGRFAM: KaiC domain protein, AF_0351 family. (246 aa)    
Predicted Functional Partners:
KCZ72655.1
RecA-superfamily ATPase possibly involved in signal transduction.
       0.818
KCZ72653.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
 
     0.625
KCZ72652.1
Archaeal flagella assembly protein J; PFAM: Type II secretion system (T2SS), protein F.
 
     0.578
KCZ72656.1
Hypothetical protein; PFAM: Winged helix-turn-helix.
       0.483
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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