STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ72904.1Flp pilus assembly protein, protease CpaA; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family. (248 aa)    
Predicted Functional Partners:
KCZ71420.1
PFAM: ScpA/B protein.
   
    0.530
KCZ72905.1
PFAM: Nucleoside 2-deoxyribosyltransferase.
       0.481
KCZ72906.1
Multimeric flavodoxin WrbA; PFAM: NADPH-dependent FMN reductase.
       0.481
KCZ72663.1
Hypothetical protein; PFAM: RNA binding.
  
  
 0.476
KCZ72602.1
Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50; PDZ domain.
     
 0.436
KCZ72662.1
dephospho-CoA kinase; PFAM: AAA domain.
  
  
 0.433
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.420
KCZ73652.1
PFAM: Type I 3-dehydroquinase; TIGRFAM: 3-dehydroquinate dehydratase, type I.
  
  
 0.420
hpsA
PFAM: Demethylmenaquinone methyltransferase; Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: 3-hexulose-6-phosphate synthase.
       0.407
KCZ72187.1
PFAM: RadC-like JAB domain; TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.
     
 0.407
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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