STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ72138.1RecA-superfamily ATPase possibly involved in signal transduction; PFAM: KaiC. (480 aa)    
Predicted Functional Partners:
KCZ72139.1
Hypothetical protein; PFAM: Roadblock/LC7 domain.
       0.774
KCZ72136.1
Hypothetical protein.
       0.773
KCZ72137.1
Hypothetical protein.
       0.773
KCZ72134.1
PFAM: Response regulator receiver domain.
     
 0.547
KCZ72135.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
       0.538
KCZ72132.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
       0.524
KCZ72133.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
       0.524
leuS
PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain of tRNA; TIGRFAM: leucyl-tRNA synthetase, archaeal and cytosolic family; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.515
rlmE
23S rRNA methylase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
       0.490
KCZ72141.1
Hypothetical protein; PFAM: PRC-barrel domain.
 
     0.422
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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