STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ71959.1PFAM: PAC2 family; TIGRFAM: TIGR00162 family protein. (253 aa)    
Predicted Functional Partners:
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
     0.859
KCZ71964.1
PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA primase, eukaryotic-type, small subunit, putative.
 
     0.777
rps27e
PFAM: Ribosomal protein S27.
 
     0.738
eif2a
PFAM: Eukaryotic translation initiation factor 2 alpha subunit; S1 RNA binding domain.
 
    0.716
polC
DNA polymerase type II, large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase.
  
     0.674
KCZ70470.1
PFAM: Ribosomal protein L31e.
  
     0.657
nac
Nascent polypeptide associated complex NAC; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
  
     0.655
KCZ73143.1
Proteasome Rpn11 subunit JAMM motif; PFAM: Prokaryotic homologs of the JAB domain.
  
     0.652
polB
Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family.
  
     0.650
KCZ70904.1
TIGRFAM: TIGR01210 family protein.
  
     0.638
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.