STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribKTranscriptional regulator of a riboflavin/FAD biosynthetic operon; PFAM: Domain of unknown function DUF120. (215 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
 
     0.840
KCZ70668.1
PFAM: Protein of unknown function (DUF357).
  
  
  0.805
ribL
Cytidyltransferase-related enzyme; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.
     
 0.789
ribC
Riboflavin synthase alpha chain; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: riboflavin synthase.
    
  0.770
KCZ73265.1
Prefoldin alpha subunit; PFAM: PUA domain; Patch-forming domain C2 of tRNA-guanine transglycosylase; TIGRFAM: uncharacterized domain 2.
  
     0.675
KCZ73459.1
DNA primase; PFAM: Toprim domain.
 
     0.657
KCZ71964.1
PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA primase, eukaryotic-type, small subunit, putative.
  
     0.649
tiaS
Putative DNA-binding protein containing a Zn-ribbon domain; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
  
     0.649
KCZ70927.1
Hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).
  
     0.645
KCZ72865.1
Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.
  
     0.636
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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