STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ70629.1Hypothetical protein; TIGRFAM: PGF-pre-PGF domain. (369 aa)    
Predicted Functional Partners:
KCZ70628.1
Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; PFAM: Cytochrome c554 and c-prime; Cytochrome c552.
       0.574
rpl-4
LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
      
 0.554
KCZ71114.1
Hypothetical protein.
     
 0.553
KCZ70630.1
Putative hydrolase of the alpha/beta superfamily; PFAM: Alpha/beta hydrolase family.
       0.448
KCZ70631.1
Hypothetical protein; PFAM: L-2-amino-thiazoline-4-carboxylic acid hydrolase.
       0.448
KCZ72813.1
Hypothetical protein; TIGRFAM: PGF-pre-PGF domain.
      
0.407
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.