STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCZ70635.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
KCZ70633.1
PFAM: Protein of unknown function DUF84; TIGRFAM: inosine/xanthosine triphosphatase.
       0.598
KCZ70634.1
Hypothetical protein.
       0.598
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
       0.503
KCZ70637.1
Sucrose-phosphate phosphatase-like hydrolase, Archaeal; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: phosphoglycolate phosphatase, TA0175-type; sucrose-phosphate phosphatase subfamily.
       0.503
KCZ70638.1
Hypothetical protein.
       0.503
KCZ70639.1
PFAM: DNA methylase.
       0.503
KCZ70640.1
Hypothetical protein; PFAM: Type II restriction endonuclease EcoO109I.
       0.503
Your Current Organism:
Methanoperedens nitroreducens
NCBI taxonomy Id: 1392998
Other names: C. Methanoperedens nitroreducens, Candidatus Methanoperedens nitroreducens
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