STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV28478.1GH3 auxin-responsive promoter. (499 aa)    
Predicted Functional Partners:
SFV28471.1
PASTA domain, binds beta-lactams.
 
     0.772
SFV33211.1
Acyl-CoA reductase (LuxC).
  
 
  0.767
SFV30448.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.743
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.732
SFV31453.1
Protein of unknown function.
  
     0.696
SFV30970.1
Hypothetical protein.
  
     0.690
SFV31612.1
Protein of unknown function.
  
     0.596
SFV35969.1
Hypothetical protein.
  
     0.592
SFV35616.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
    
  0.588
SFV31400.1
Capsular exopolysaccharide family.
    
  0.583
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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