STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV28769.1Altronate hydrolase. (555 aa)    
Predicted Functional Partners:
SFV28774.1
Tagaturonate reductase.
 
 0.995
SFV28753.1
2-dehydro-3-deoxygluconokinase.
 
 
 0.933
uxaC
Glucuronate isomerase.
  
 0.921
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.859
SFV28760.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
  
  0.808
SFV28786.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.768
SFV28782.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.751
SFV27255.1
L-fuconolactonase.
 
   
 0.659
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.595
SFV28749.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.545
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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