STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV29297.1TonB-linked outer membrane protein, SusC/RagA family. (989 aa)    
Predicted Functional Partners:
SFV29293.1
Starch-binding associating with outer membrane.
     0.936
SFV27766.1
Starch-binding associating with outer membrane.
  
     0.758
SFV31082.1
Starch-binding associating with outer membrane.
 
     0.752
SFV27223.1
Starch-binding associating with outer membrane.
  
     0.737
SFV34848.1
Starch-binding associating with outer membrane.
 
     0.728
SFV34584.1
Starch-binding associating with outer membrane.
  
     0.721
SFV28538.1
TonB family C-terminal domain-containing protein.
  
   0.664
SFV29284.1
Uncharacterized conserved protein, DUF885 familyt.
 
     0.653
SFV34567.1
SusD family protein.
  
     0.648
SFV34345.1
Starch-binding associating with outer membrane.
  
     0.644
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.