STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV29916.1Glyoxylase, beta-lactamase superfamily II. (258 aa)    
Predicted Functional Partners:
SFV29920.1
Rod shape determining protein RodA; Belongs to the SEDS family.
       0.740
SFV29924.1
Penicillin-binding protein 2.
       0.727
SFV31931.1
Protein of unknown function.
  
     0.533
SFV29928.1
Rod shape-determining protein MreD.
       0.504
SFV29932.1
Rod shape-determining protein MreC.
       0.504
SFV33190.1
pRiA4b ORF-3-like protein.
  
     0.463
SFV33887.1
FAD/FMN-containing dehydrogenase.
    
 0.451
SFV28205.1
NUDIX domain-containing protein.
  
     0.443
SFV28466.1
Rhodanese-related sulfurtransferase.
   
  0.430
SFV31544.1
Glyoxylase, beta-lactamase superfamily II.
   
  0.430
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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