STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV30716.1Lycopene beta-cyclase. (394 aa)    
Predicted Functional Partners:
SFV30699.1
Phytoene desaturase.
 
 
 0.950
SFV30711.1
Beta-carotene 3-hydroxylase.
 
  
 0.947
SFV30702.1
Phytoene/squalene synthetase.
 
 
 0.903
SFV35998.1
Electron transfer flavoprotein beta subunit.
  
 
 0.857
SFV30694.1
DNA-binding transcriptional regulator, MerR family.
 
     0.850
SFV30706.1
Isopentenyl-diphosphate delta-isomerase.
  
    0.782
SFV30696.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.743
SFV36002.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.638
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.461
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.461
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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