STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV33657.1Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family. (461 aa)    
Predicted Functional Partners:
SFV33660.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.951
SFV33663.1
Hypothetical protein.
       0.534
SFV34481.1
Phytanoyl-CoA dioxygenase (PhyH).
  
     0.520
SFV33016.1
Methyltransferase domain-containing protein.
  
 
 
 0.515
SFV29556.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
     0.511
SFV27161.1
Porphobilinogen synthase; Belongs to the ALAD family.
    
 0.489
SFV32322.1
PAS domain S-box-containing protein.
   
 
 0.477
SFV33000.1
Ubiquinone biosynthesis O-methyltransferase.
  
 
 
 0.453
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.442
SFV32961.1
Hypothetical protein.
   
 
 0.438
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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