STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV33762.1Anti-sigma-K factor RskA. (261 aa)    
Predicted Functional Partners:
SFV33758.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.927
SFV32403.1
Ferritin-like domain-containing protein.
  
     0.597
SFV32398.1
Ferritin-like domain-containing protein.
  
     0.586
SFV30680.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.583
SFV27057.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
   0.529
SFV27078.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
   0.529
SFV27234.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
   0.529
SFV27700.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.529
SFV28098.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
   0.529
SFV30166.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
   0.529
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.