STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHB41210.1Ribosomal RNA small subunit methyltransferase I; RAAC1_SR1_1_392. (223 aa)    
Predicted Functional Partners:
yebU
rRNA (cytosine-C(5)-)-methyltransferase RsmF; RAAC1_SR1_1_1013.
     
 0.750
leuS
Hypothetical protein; RAAC1_SR1_1_888; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.638
pheT
Hypothetical protein; RAAC1_SR1_1_339; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.546
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.493
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
  
 0.479
AHB41672.1
Hypothetical protein; RAAC1_SR1_1_855.
  
  
 0.474
AHB40858.1
Hypothetical protein; RAAC1_SR1_1_40.
  
  
 0.471
AHB41042.1
Hypothetical protein; RAAC1_SR1_1_224.
  
  
 0.469
AHB41109.1
Endo/excinuclease amino terminal protein; RAAC1_SR1_1_291.
  
  
 0.449
rpmF
Hypothetical protein; RAAC1_SR1_1_229; Belongs to the bacterial ribosomal protein bL32 family.
     
 0.447
Your Current Organism:
candidate division SR1 bacterium RAAC1SR11
NCBI taxonomy Id: 1394709
Other names: c. division SR1 bacterium RAAC1_SR1_1, candidate division SR1 bacterium RAAC1_SR1_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.