STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHB42253.1Hypothetical protein; RAAC3_TM7_1_384. (144 aa)    
Predicted Functional Partners:
AHB42254.1
Sigma-70 region 3 protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.572
AHB42252.1
Hypothetical protein; RAAC3_TM7_1_383.
       0.554
polA
Hypothetical protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.547
AHB42256.1
NUDIX hydrolase; RAAC3_TM7_1_387.
       0.547
AHB42257.1
Hypothetical protein; RAAC3_TM7_1_388.
       0.547
AHB42258.1
Hypothetical protein; RAAC3_TM7_1_389.
       0.547
AHB42259.1
Protein-tyrosine-phosphatase; RAAC3_TM7_1_390; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.547
AHB42260.1
Hypothetical protein; RAAC3_TM7_1_391.
       0.547
AHB42261.1
Hypothetical protein; RAAC3_TM7_1_392.
       0.476
AHB42251.1
Hypothetical protein; RAAC3_TM7_1_382.
       0.428
Your Current Organism:
Saccharibacteria bacterium RAAC3TM71
NCBI taxonomy Id: 1394711
Other names: C. Saccharibacteria bacterium RAAC3_TM7_1, Candidatus Saccharibacteria bacterium RAAC3_TM7_1
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