STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHB42284.1Hemolysin A, nonfunctional; RAAC3_TM7_1_415. (238 aa)    
Predicted Functional Partners:
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
    0.806
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.773
AHB42282.1
Hypothetical protein; RAAC3_TM7_1_413.
       0.773
AHB42280.1
Single-strand binding protein; RAAC3_TM7_1_411.
       0.744
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
       0.736
pheT
Phenylalanine-tRNA ligase beta subunit; RAAC3_TM7_1_845; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.642
AHB42278.1
Prepilin-type cleavage/methylation protein; RAAC3_TM7_1_409.
       0.500
AHB42277.1
Cell division FtsK/SpoIIIE; RAAC3_TM7_1_408.
  
    0.497
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.481
AHB42535.1
UvrD/REP helicase; RAAC3_TM7_1_666; Belongs to the helicase family. UvrD subfamily.
  
    0.403
Your Current Organism:
Saccharibacteria bacterium RAAC3TM71
NCBI taxonomy Id: 1394711
Other names: C. Saccharibacteria bacterium RAAC3_TM7_1, Candidatus Saccharibacteria bacterium RAAC3_TM7_1
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