STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETB64213.1Hypothetical protein; RAAC4_OD1_1_663. (239 aa)    
Predicted Functional Partners:
ETB64212.1
Secretion protein HlyD; RAAC4_OD1_1_662; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.999
ETB64214.1
Hypothetical protein; RAAC4_OD1_1_664.
 0.999
ETB64215.1
Hypothetical protein; RAAC4_OD1_1_665.
 0.999
ETB63912.1
Extracellular solute-binding protein family 5; RAAC4_OD1_1_362.
  
 
 0.808
ETB64211.1
Hypothetical protein; RAAC4_OD1_1_661.
       0.749
ftsE
Hypothetical protein; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 
0.688
ETB63748.1
Peptidase, M23/M37 family; RAAC4_OD1_1_199.
  
 
 0.538
topA
DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...]
     
 0.537
ETB64210.1
Hypothetical protein; RAAC4_OD1_1_660.
  
    0.520
ETB63637.1
Transcriptional regulator, XRE family; RAAC4_OD1_1_88.
     
 0.504
Your Current Organism:
Parcubacteria bacterium RAAC4OD11
NCBI taxonomy Id: 1394712
Other names: P. bacterium RAAC4_OD1_1, Parcubacteria bacterium RAAC4_OD1_1, candidate division OD1 bacterium RAAC4_OD1_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.