STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFX71872.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)    
Predicted Functional Partners:
KFX71363.1
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.682
KFX69992.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.548
KFX67932.1
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.525
KFX71866.1
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.523
KFX71871.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
Your Current Organism:
Pseudomonas taeanensis
NCBI taxonomy Id: 1395571
Other names: P. taeanensis MS-3, Pseudomonas sp. MS-3, Pseudomonas taeanensis KCTC 22612, Pseudomonas taeanensis MS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.