STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000739635_06121Unannotated protein. (203 aa)    
Predicted Functional Partners:
GCA_000739635_06119
Unannotated protein.
 
 0.999
GCA_000739635_02184
Unannotated protein.
  
  0.958
GCA_000739635_06122
Unannotated protein.
 
    0.944
GCA_000739635_06120
Unannotated protein.
    
  0.932
GCA_000739635_02183
Unannotated protein.
  
  0.871
GCA_000739635_06125
Unannotated protein.
 
     0.858
GCA_000739635_06124
Unannotated protein.
 
     0.838
GCA_000739635_02176
Unannotated protein.
   
  0.816
GCA_000739635_02181
Unannotated protein.
   
  0.813
GCA_000739635_00465
Unannotated protein.
   
  0.677
Your Current Organism:
Verrucomicrobium sp. BvORR034
NCBI taxonomy Id: 1396418
Other names: V. sp. BvORR034
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