STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK53117.1AAA domain-containing protein, putative AbiEii toxin, Type IV TA system. (556 aa)    
Predicted Functional Partners:
SEK53158.1
Hypothetical protein.
 
   
 0.938
SEL16398.1
Putative NADH-flavin reductase.
   
    0.737
SEK34442.1
Type I restriction enzyme, R subunit.
  
    0.640
SEK66268.1
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.640
SEL16171.1
Type I restriction enzyme, R subunit.
  
    0.640
SEL50957.1
Type I restriction enzyme, R subunit.
  
    0.640
SEK66138.1
Type I restriction enzyme, S subunit.
  
    0.634
SEK76973.1
Type I restriction enzyme, S subunit.
  
    0.634
SEL16238.1
Type I restriction enzyme, S subunit.
  
    0.634
SEL50789.1
Type I restriction enzyme, S subunit.
  
    0.634
Your Current Organism:
Ectothiorhodospira marina
NCBI taxonomy Id: 1396821
Other names: DSM 241, E. marina
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