STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH98103.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
gloA
Lactoylglutathione lyase.
   
    0.704
CUH98953.1
Hypothetical protein.
  
     0.700
CUH98900.1
Universal stress protein family protein.
  
     0.694
nusB
Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.629
CUH98104.1
Hypothetical protein.
 
     0.603
ribH1
6,7-dimethyl-8-ribityllumazine synthase 1; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
       0.597
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
       0.595
CUH99850.1
Hypothetical protein.
  
     0.586
CUH98911.1
Putative integral membrane protein linked to a cation pump.
  
     0.573
CUH99851.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Leisingera aquaemixtae
NCBI taxonomy Id: 1396826
Other names: CECT 8399, KCTC 32538, L. aquaemixtae, Leisingera aquaemixtae (Park et al. 2014) Breider et al. 2014, Phaeobacter aquaemixtae, Phaeobacter aquaemixtae Park et al. 2014, Phaeobacter sp. SSK6-1, strain SSK6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.