STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP_4C4-dicarboxylate-binding periplasmic protein precursor. (333 aa)    
Predicted Functional Partners:
yiaM
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
  
 0.917
siaT_15
Neu5Ac permease.
 
  
 0.905
siaT_12
Neu5Ac permease.
 
  
 0.731
siaT_3
Neu5Ac permease.
 
  
 0.697
siaT_6
Neu5Ac permease.
 
  
 0.681
siaT_13
Neu5Ac permease.
 
  
 0.668
siaT_4
Neu5Ac permease.
 
  
 0.626
siaT_9
Neu5Ac permease.
 
  
 0.618
siaT_14
Neu5Ac permease.
 
  
 0.594
siaT_7
Neu5Ac permease.
 
  
 0.591
Your Current Organism:
Leisingera aquaemixtae
NCBI taxonomy Id: 1396826
Other names: CECT 8399, KCTC 32538, L. aquaemixtae, Leisingera aquaemixtae (Park et al. 2014) Breider et al. 2014, Phaeobacter aquaemixtae, Phaeobacter aquaemixtae Park et al. 2014, Phaeobacter sp. SSK6-1, strain SSK6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.