A0A182MMQ9 protein (Anopheles culicifacies) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A182MMQ9

Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (149 aa)

Predicted Functional Partners:

A0A182MCM1

0.996

A0A182LZI9

0.994

A0A182MQR6

0.982

A0A182M695

0.949

A0A182LSP1

0.930

A0A182MUD5

0.919

A0A182MFM2

0.913

A0A182M2J9

0.902

A0A182MWC0

0.889

A0A182MMH8

0.885

Your Current Organism:

Anopheles culicifacies

NCBI taxonomy Id: 139723
Other names: A. culicifacies

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A182LSP1	A0A182M2J9	RRM domain-containing protein.	Uncharacterized protein.	0.849
A0A182LSP1	A0A182MCM1	RRM domain-containing protein.	RRM domain-containing protein.	0.958
A0A182LSP1	A0A182MFM2	RRM domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.951
A0A182LSP1	A0A182MMH8	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.920
A0A182LSP1	A0A182MMQ9	RRM domain-containing protein.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.930
A0A182LSP1	A0A182MQR6	RRM domain-containing protein.	Uncharacterized protein.	0.902
A0A182LSP1	A0A182MUD5	RRM domain-containing protein.	THO complex subunit 4.	0.822
A0A182LZI9	A0A182M2J9	RRM domain-containing protein.	Uncharacterized protein.	0.906
A0A182LZI9	A0A182M695	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.416
A0A182LZI9	A0A182MCM1	RRM domain-containing protein.	RRM domain-containing protein.	0.999
A0A182LZI9	A0A182MFM2	RRM domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.995
A0A182LZI9	A0A182MMH8	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.990
A0A182LZI9	A0A182MMQ9	RRM domain-containing protein.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.994
A0A182LZI9	A0A182MQR6	RRM domain-containing protein.	Uncharacterized protein.	0.988
A0A182LZI9	A0A182MUD5	RRM domain-containing protein.	THO complex subunit 4.	0.964
A0A182M2J9	A0A182LSP1	Uncharacterized protein.	RRM domain-containing protein.	0.849
A0A182M2J9	A0A182LZI9	Uncharacterized protein.	RRM domain-containing protein.	0.906
A0A182M2J9	A0A182MCM1	Uncharacterized protein.	RRM domain-containing protein.	0.919
A0A182M2J9	A0A182MFM2	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.997
A0A182M2J9	A0A182MMH8	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999