Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AB434_0541PTS system, maltose and glucose-specific IIC component. (535 aa)    
Predicted Functional Partners:
AB434_0538
PTS system, glucose-specific IIA component.
 
 0.991
AB434_0760
PTS system, maltose and glucose-specific IIC component.
 
 0.991
AB434_1456
PTS system, glucose-specific IIA component.
 
 0.991
AB434_3967
PTS system, glucose-specific IIC component.
 
 0.991
AB434_2275
PTS system, beta-glucoside-specific IIB component.
 
 0.979
AB434_0540
Maltose-6'-phosphate glucosidase.
 
  
 0.941
AB434_0770
PTS system, beta-glucoside-specific IIB component.
 
 
 0.935
AB434_0425
PTS system, beta-glucoside-specific IIB component.
 
 
 0.918
AB434_0416
PTS system, fructose-specific IIA component.
  
  
 0.869
AB434_1687
Xylose-responsive transcription regulator, ROK family.
  
 
 0.814
Your Current Organism:
Bacillus coagulans
NCBI taxonomy Id: 1398
Other names: ATCC 7050, B. coagulans, BCRC 10606, Bacillus sp. NCIM 2323, CCM 2013, CCRC 10606, CCRC:10606, CCUG 7417, CFBP 4225, CIP 66.25, DSM 1, IFO 12583, IMET 10993, JCM 2257, LMG 6326, LMG:6326, Lactobacillus sp. T4, NBRC 12583, NCAIM B.01086, NCCB 48014, NCCB 77025, NCIB 9365, NCIMB 9365, NCTC 10334, NRRL NRS-609, VKM B-731
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