STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB434_0809ABC transporter, ATP-binding protein. (276 aa)    
Predicted Functional Partners:
AB434_0810
ABC-type multidrug transport system, ATPase component.
 
  
 0.931
AB434_0811
Transcriptional regulator, GntR family.
 
  
 0.917
AB434_0966
Transcriptional regulator, GntR family.
 
  
 0.665
AB434_1651
Transcriptional regulator, GntR family.
 
  
 0.631
AB434_0813
Negative regulator of phenolic acid metabolism PadR.
  
    0.528
AB434_0141
ABC transporter, permease protein.
  
 
 0.500
AB434_1907
ABC transporter permease component-like protein.
  
 
 0.500
AB434_3117
ABC transporter, permease protein.
  
 
 0.500
AB434_0812
Hypothetical protein.
       0.476
Your Current Organism:
Bacillus coagulans
NCBI taxonomy Id: 1398
Other names: ATCC 7050, B. coagulans, BCRC 10606, Bacillus sp. NCIM 2323, CCM 2013, CCRC 10606, CCRC:10606, CCUG 7417, CFBP 4225, CIP 66.25, DSM 1, IFO 12583, IMET 10993, JCM 2257, LMG 6326, LMG:6326, Lactobacillus sp. T4, NBRC 12583, NCAIM B.01086, NCCB 48014, NCCB 77025, NCIB 9365, NCIMB 9365, NCTC 10334, NRRL NRS-609, VKM B-731
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.