Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AB434_0921 | AB434_0924 | AB434_0921 | AB434_0924 | Stage III sporulation protein D. | Stage II sporulation protein D (SpoIID). | 0.580 |
AB434_0921 | AB434_0949 | AB434_0921 | AB434_0949 | Stage III sporulation protein D. | Stage II sporulation protein. | 0.817 |
AB434_0921 | AB434_2377 | AB434_0921 | AB434_2377 | Stage III sporulation protein D. | Stage V sporulation protein AC (SpoVAC). | 0.786 |
AB434_0921 | AB434_2612 | AB434_0921 | AB434_2612 | Stage III sporulation protein D. | RNA polymerase sporulation specific sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.811 |
AB434_0921 | AB434_3303 | AB434_0921 | AB434_3303 | Stage III sporulation protein D. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.849 |
AB434_0921 | AB434_3421 | AB434_0921 | AB434_3421 | Stage III sporulation protein D. | Stage III sporulation protein AD. | 0.797 |
AB434_0921 | AB434_3424 | AB434_0921 | AB434_3424 | Stage III sporulation protein D. | Stage III sporulation protein AA. | 0.805 |
AB434_0921 | gpr | AB434_0921 | AB434_3528 | Stage III sporulation protein D. | Endopeptidase spore protease Gpr; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.770 |
AB434_0921 | spoIIAA | AB434_0921 | AB434_3357 | Stage III sporulation protein D. | Anti-sigma F factor antagonist (spoIIAA-2); In the phosphorylated form it could act as an anti-anti-sigma factor that counteracts SpoIIAB and thus releases sigma f from inhibition; Belongs to the anti-sigma-factor antagonist family. | 0.446 |
AB434_0921 | spoIIAB | AB434_0921 | AB434_3356 | Stage III sporulation protein D. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.809 |
AB434_0924 | AB434_0921 | AB434_0924 | AB434_0921 | Stage II sporulation protein D (SpoIID). | Stage III sporulation protein D. | 0.580 |
AB434_0924 | AB434_0949 | AB434_0924 | AB434_0949 | Stage II sporulation protein D (SpoIID). | Stage II sporulation protein. | 0.597 |
AB434_0924 | AB434_2377 | AB434_0924 | AB434_2377 | Stage II sporulation protein D (SpoIID). | Stage V sporulation protein AC (SpoVAC). | 0.539 |
AB434_0924 | AB434_2612 | AB434_0924 | AB434_2612 | Stage II sporulation protein D (SpoIID). | RNA polymerase sporulation specific sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.447 |
AB434_0924 | AB434_3303 | AB434_0924 | AB434_3303 | Stage II sporulation protein D (SpoIID). | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.806 |
AB434_0924 | AB434_3424 | AB434_0924 | AB434_3424 | Stage II sporulation protein D (SpoIID). | Stage III sporulation protein AA. | 0.537 |
AB434_0924 | gpr | AB434_0924 | AB434_3528 | Stage II sporulation protein D (SpoIID). | Endopeptidase spore protease Gpr; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.610 |
AB434_0924 | spoIIAB | AB434_0924 | AB434_3356 | Stage II sporulation protein D (SpoIID). | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.539 |
AB434_0949 | AB434_0921 | AB434_0949 | AB434_0921 | Stage II sporulation protein. | Stage III sporulation protein D. | 0.817 |
AB434_0949 | AB434_0924 | AB434_0949 | AB434_0924 | Stage II sporulation protein. | Stage II sporulation protein D (SpoIID). | 0.597 |
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