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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB434_3545Glycolate dehydrogenase. (446 aa)    
Predicted Functional Partners:
AB434_3546
Glycolate dehydrogenase.
 
 0.998
AB434_3547
Glycolate dehydrogenase.
 
  
 0.973
AB434_0733
Malate synthase; Belongs to the malate synthase family.
  
 
 0.926
AB434_2282
Aldehyde dehydrogenase A; Belongs to the aldehyde dehydrogenase family.
  
 
 0.913
AB434_1451
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.911
AB434_0732
Isocitrate lyase.
     
 0.908
AB434_0044
4-hydroxy-2-oxoglutarate aldolase.
     
 0.904
lutB
Putative L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate.
 
 
 0.904
AB434_0019
Catalase; Belongs to the catalase family.
     
  0.900
AB434_1310
Catalase.
     
  0.900
Your Current Organism:
Bacillus coagulans
NCBI taxonomy Id: 1398
Other names: ATCC 7050, B. coagulans, BCRC 10606, Bacillus sp. NCIM 2323, CCM 2013, CCRC 10606, CCRC:10606, CCUG 7417, CFBP 4225, CIP 66.25, DSM 1, IFO 12583, IMET 10993, JCM 2257, LMG 6326, LMG:6326, Lactobacillus sp. T4, NBRC 12583, NCAIM B.01086, NCCB 48014, NCCB 77025, NCIB 9365, NCIMB 9365, NCTC 10334, NRRL NRS-609, VKM B-731
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