STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB434_3919Hydroxymethylpyrimidine ABC transporter, ATPase component. (256 aa)    
Predicted Functional Partners:
AB434_3920
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
 
  
 0.971
AB434_3918
ABC transporter substrate-binding protein.
 
  
 0.952
AB434_3053
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
  
 0.787
AB434_1966
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
  
 0.766
AB434_2409
ABC transporter, ATP-binding protein.
 
    
0.763
AB434_2658
Taurine transport system permease protein TauC.
 
  
 0.753
AB434_0635
Alkanesulfonates transport system permease protein.
  
 0.654
AB434_0193
Alkanesulfonates transport system permease protein.
  
 0.647
AB434_3118
ABC transporter, ATP-binding protein.
 
    
0.604
AB434_3054
Hydroxymethylpyrimidine ABC transporter, substrate-binding component.
 
  
 0.573
Your Current Organism:
Bacillus coagulans
NCBI taxonomy Id: 1398
Other names: ATCC 7050, B. coagulans, BCRC 10606, Bacillus sp. NCIM 2323, CCM 2013, CCRC 10606, CCRC:10606, CCUG 7417, CFBP 4225, CIP 66.25, DSM 1, IFO 12583, IMET 10993, JCM 2257, LMG 6326, LMG:6326, Lactobacillus sp. T4, NBRC 12583, NCAIM B.01086, NCCB 48014, NCCB 77025, NCIB 9365, NCIMB 9365, NCTC 10334, NRRL NRS-609, VKM B-731
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