STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP_0114280BTB domain-containing protein. (880 aa)    
Predicted Functional Partners:
SCP_0210700
Transcription initiation factor IIB.
   
 0.981
SCP_0102860
Transcription initiation factor TFIID 111 kDa.
    
 0.977
SCP_0103540
Transcription initiation factor TFIID subunit 2.
    
 0.977
SCP_0109070
Transcription initiation factor TFIID subunit 5.
    
 0.977
SCP_0205660
TFIID-31kDa-domain-containing protein.
    
 0.977
SCP_0214260
Transcription initiation factor TFIID subunit 4.
    
 0.977
SCP_0303730
TFIID_20kDa domain-containing protein.
    
 0.977
SCP_0405720
Transcription initiation factor TFIID subunit 7.
    
 0.977
SCP_0503120
Transcription initiation factor TFIID subunit 6.
   
 0.977
SCP_0904490
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.977
Your Current Organism:
Sparassis crispa
NCBI taxonomy Id: 139825
Other names: S. crispa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.