STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP_0401270Uncharacterized protein. (570 aa)    
Predicted Functional Partners:
SCP_0108920
WD40 repeat-like protein.
    
 0.680
SCP_0103990
Histone acetyltransferase type B subunit 2.
    
 0.659
SCP_0203240
Set1 complex component swd1.
    
 0.658
SCP_0410060
Set1 complex component ash2.
    
 0.658
SCP_0105040
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.641
SCP_0507430
F-box domain-containing protein.
    
 0.641
SCP_0802370
Uncharacterized protein.
   
 0.631
SCP_1002290
Histone H2A; Belongs to the histone H2A family.
    
 0.608
SCP_0205450
Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.
   
  0.540
SCP_0102310
Histone H3; Belongs to the histone H3 family.
    
 0.526
Your Current Organism:
Sparassis crispa
NCBI taxonomy Id: 139825
Other names: S. crispa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.