STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP_0510440NDC10_II domain-containing protein. (639 aa)    
Predicted Functional Partners:
SCP_0209780
Nsp1_C domain-containing protein.
    
 0.751
SCP_0308050
DNA-directed RNA polymerase II subunit RPB3.
    
  0.689
SCP_1300640
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.687
SCP_0105770
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.685
SCP_0111890
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.685
SCP_0204980
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
  0.680
SCP_0803920
Transcription elongation factor S-II.
    
  0.679
SCP_1403340
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.675
SCP_0905290
DNA-directed RNA polymerase II subunit rpb4.
    
  0.672
SCP_0105570
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
  0.671
Your Current Organism:
Sparassis crispa
NCBI taxonomy Id: 139825
Other names: S. crispa
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