STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KML46055.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
KML36402.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.938
KML46054.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
KML39501.1
ecsC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
KML41879.1
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
KML41823.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
KML45416.1
Membrane protein; Probably functions as a manganese efflux pump.
  
     0.430
uvsE
UV damage repair endonuclease UvdE; Component in a DNA repair pathway. Removal of UV-light damaged nucleotides. Recognizes pyrimidine dimers and cleave a phosphodiester bond immediately 5' to the lesion.
  
   
 0.429
KML46185.1
CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
KML44206.1
UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.406
Your Current Organism:
Bacillus firmus
NCBI taxonomy Id: 1399
Other names: ATCC 14575, B. firmus, BCRC 11730, Bacillaceae bacterium HQ2, Bacillus sp. JP44SK20, Bacillus sp. LK28, Bacillus sp. NCIM 2264, Bacillus sp. NCIM 2462, CCM 2213, CCRC 11730, CCRC:11730, CCUG 7418, CIP 52.70, DSM 12, IAM 12464, IFO 15306, JCM 2512, LMG 7125, LMG:7125, NBRC 15306, NCAIM B.01087, NCCB 48015, NCIB 9366, NCIMB 9366, NCTC 10335, NRRL B-14307, NRRL NRS-613, VKM B-498
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