STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000518265_03995Unannotated protein. (408 aa)    
Predicted Functional Partners:
GCA_000518265_03998
Unannotated protein.
  
  0.963
GCA_000518265_03996
Unannotated protein.
 
    0.954
GCA_000518265_03997
Unannotated protein.
 
     0.874
GCA_000518265_03999
Unannotated protein.
 
 
   0.865
GCA_000518265_04009
Unannotated protein.
 
 
 0.828
GCA_000518265_04002
Unannotated protein.
 
     0.800
GCA_000518265_06795
Unannotated protein.
  
 
 0.762
GCA_000518265_03331
Unannotated protein.
    
 0.761
GCA_000518265_00465
Unannotated protein.
    
 0.741
GCA_000518265_01623
Unannotated protein.
    
 0.741
Your Current Organism:
Actinomadura oligospora
NCBI taxonomy Id: 1399798
Other names: A. oligospora ATCC 43269, Actinomadura oligospora ATCC 43269
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.