CDD81_2896 protein (Ophiocordyceps australis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CDD81_2896

Uncharacterized protein. (245 aa)

Predicted Functional Partners:

CDD81_7506

0.957

CDD81_3711

0.955

CDD81_7369

0.949

CDD81_620

0.948

CDD81_5210

0.938

CDD81_7759

0.936

CDD81_3318

0.936

CDD81_3381

0.933

CDD81_6411

0.933

CDD81_7526

0.932

Your Current Organism:

Ophiocordyceps australis

NCBI taxonomy Id: 1399860
Other names: Cordyceps australis, Cordyceps unilateralis var. australis, O. australis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDD81_2896	CDD81_3318	A0A2C5XXU8	A0A2C5Y8Z7	Uncharacterized protein.	Uncharacterized protein.	0.936
CDD81_2896	CDD81_3381	A0A2C5XXU8	A0A2C5XXI6	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.933
CDD81_2896	CDD81_3711	A0A2C5XXU8	A0A2C5XRP1	Uncharacterized protein.	Uncharacterized protein.	0.955
CDD81_2896	CDD81_5210	A0A2C5XXU8	A0A2C5XQ24	Uncharacterized protein.	Uncharacterized protein.	0.938
CDD81_2896	CDD81_620	A0A2C5XXU8	A0A2C5Y1Y9	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.948
CDD81_2896	CDD81_6411	A0A2C5XXU8	A0A2C5Y5L9	Uncharacterized protein.	Uncharacterized protein.	0.933
CDD81_2896	CDD81_7369	A0A2C5XXU8	A0A2C5XY42	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.949
CDD81_2896	CDD81_7506	A0A2C5XXU8	A0A2C5YHR9	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.957
CDD81_2896	CDD81_7526	A0A2C5XXU8	A0A2C5Y4J1	Uncharacterized protein.	Uncharacterized protein.	0.932
CDD81_2896	CDD81_7759	A0A2C5XXU8	A0A2C5XXC1	Uncharacterized protein.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.936
CDD81_3318	CDD81_2896	A0A2C5Y8Z7	A0A2C5XXU8	Uncharacterized protein.	Uncharacterized protein.	0.936
CDD81_3318	CDD81_3381	A0A2C5Y8Z7	A0A2C5XXI6	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.941
CDD81_3318	CDD81_3711	A0A2C5Y8Z7	A0A2C5XRP1	Uncharacterized protein.	Uncharacterized protein.	0.971
CDD81_3318	CDD81_5210	A0A2C5Y8Z7	A0A2C5XQ24	Uncharacterized protein.	Uncharacterized protein.	0.941
CDD81_3318	CDD81_620	A0A2C5Y8Z7	A0A2C5Y1Y9	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.944
CDD81_3318	CDD81_6411	A0A2C5Y8Z7	A0A2C5Y5L9	Uncharacterized protein.	Uncharacterized protein.	0.971
CDD81_3318	CDD81_7369	A0A2C5Y8Z7	A0A2C5XY42	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.920
CDD81_3318	CDD81_7506	A0A2C5Y8Z7	A0A2C5YHR9	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.974
CDD81_3318	CDD81_7526	A0A2C5Y8Z7	A0A2C5Y4J1	Uncharacterized protein.	Uncharacterized protein.	0.922
CDD81_3318	CDD81_7759	A0A2C5Y8Z7	A0A2C5XXC1	Uncharacterized protein.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.910