STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR51_24470General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
CR51_24465
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
CR51_24475
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.994
CR51_24480
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.994
CR51_24485
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.993
CR51_24455
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.791
CR51_24460
Type II secretion system protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.785
CR51_24450
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.722
CR51_24490
General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.662
CR51_33430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.662
CR51_33435
Pilus assembly protein PilE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.662
Your Current Organism:
Caballeronia megalochromosomata
NCBI taxonomy Id: 1399969
Other names: Burkholderia megalochromosomata, Burkholderia megalochromosomata Baek et al. 2015, Burkholderia sp. JC2949, C. megalochromosomata, Caballeronia megalochromosomata (Baek et al. 2015) Dobritsa and Samadpour 2016, JCM 19905, KACC 17925, strain JC2949
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.