STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcDArginine/ornithine antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
arcC
ABC transporter substrate-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbamate kinase family.
     
 0.856
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
  
  
 0.821
arcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.748
AMR75032.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AMR75031.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.474
AMR75395.1
Na(+)/H(+) antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.442
Your Current Organism:
Borrelia hermsii
NCBI taxonomy Id: 140
Other names: B. hermsii, Spirochaeta hermsi, strain DAH
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