STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMR75652.1Von Willebrand factor type A domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
AMR75650.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
AMR75653.1
Putative membrane spanning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.957
AMR75654.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.886
AMR75655.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.849
moxR
MoxR-like ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.846
AMR75651.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
trmE
tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.634
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.632
gidB
16S rRNA (guanine(527)-N(7))-methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.632
flbF
Flagellar protein FlbF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.477
Your Current Organism:
Borrelia hermsii
NCBI taxonomy Id: 140
Other names: B. hermsii, Spirochaeta hermsi, strain DAH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.