STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctfBButyrate--acetoacetate CoA-transferase subunit B. (220 aa)    
Predicted Functional Partners:
ctfA
Butyrate--acetoacetate CoA-transferase subunit A.
 0.999
atoB
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.986
AGY53701.1
3-keto-5-aminohexanoate cleavage enzyme.
    
  0.967
bcd
Acyl-CoA dehydrogenase, short-chain specific.
 
 
 0.919
buk1
Putative butyrate kinase 1; Belongs to the acetokinase family.
     
 0.906
AGY53698.1
L-lysine 2,3-aminomutase.
  
  
 0.777
AGY53695.1
L-beta-lysine 5,6-aminomutase alpha subunit.
   
 
 0.763
AGY53694.1
L-beta-lysine 5,6-aminomutase beta subunit.
       0.747
AGY53697.1
Hypothetical protein.
       0.747
AGY53700.1
3,5-diaminobexanoate dehydrogenase.
       0.747
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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