STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioF8-amino-7-oxononanoate synthase. (379 aa)    
Predicted Functional Partners:
AGY53777.1
Hypothetical protein.
   
 0.824
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.796
vdlC
Putative short-chain type dehydrogenase/reductase vdlC; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.721
bioB
Biotin synthase.
  
  
 0.597
AGY53780.1
Hypothetical protein.
       0.586
AGY54416.1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
    
 0.522
AGY54652.1
Hypothetical protein.
   
 0.486
AGY54033.1
Hypothetical protein.
   
 0.468
AGY54305.1
DEAD-DEAH Box Helicase Domain-Containing Protein VrlS.
   
    0.465
plsC
Phospholipid/Glycerol Acyltransferase.
  
 
 0.433
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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